nf-core/merquryfk/katgc @ 0.0.0-6c4ed3a
Summary
A reimplemenation of KatGC to work with FastK databases
Get started
Add the following snippet to your workflow script to include this module.
include { MERQURYFK_KATGC } from 'nf-core/merquryfk/katgc'
License
MIT License
Process
Name
|
MERQURYFK_KATGC |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fastk_hist
file
|
A histogram files from the program FastK *.hist
|
fastk_ktab
file
|
ktab files from the program FastK *.ktab*
|
Output
4 channels
#1
images
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] *.fi.{png,pdf}
|
|---|---|
*.{png,pdf}
file
|
GC content plots in PNG or PDF format *.{png,pdf}
|
#2
versions_r
tuple
${task.process}
string
|
The name of the process |
|---|---|
R
string
|
The name of the tool |
R --version | sed "1!d; s/.*version //; s/ .*//"
eval
|
The expression to obtain the version of the tool |
#3
versions_fastk
tuple
${task.process}
string
|
The name of the process |
|---|---|
fastk
string
|
The name of the tool |
1.2
string
|
The expression to obtain the version of the tool |
#4
versions_merquryfk
tuple
${task.process}
string
|
The name of the process |
|---|---|
merquryfk
string
|
The name of the tool |
1.2
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| merquryfk | FastK based version of Merqury | https://github.com/thegenemyers/MERQURY.FK |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:29:58 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmerquryfk%2Fkatgc/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/merquryfk/katgc/blobs/sha256:8b2f772c09036c9cfe8c76a81ab24bf51702d4c8930b811712288d6211acfa4d |
| Size | 2.8 KB |
| Checksum | sha256:8b2f772c09036c9cfe8c76a81ab24bf51702d4c8930b811712288d6211acfa4d |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:29:58 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:17:01 (UTC) | 4 | 2.8 KB |