nf-core/metabat2/jgisummarizebamcontigdepths @ 0.0.0-6c4ed3a
Summary
Depth computation per contig step of metabat2
Get started
Add the following snippet to your workflow script to include this module.
include { METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS } from 'nf-core/metabat2/jgisummarizebamcontigdepths'
License
MIT License
Process
Name
|
METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
Sorted BAM file of reads aligned on the assembled contigs *.bam
|
bai
file
|
BAM index file *.bam.bai
|
Output
2 channels
#1
depth
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt.gz
file
|
Text file listing the coverage per contig .txt.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| metabat2 | Metagenome binning | https://bitbucket.org/berkeleylab/metabat/src/master/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:30:06 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmetabat2%2Fjgisummarizebamcontigdepths/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/metabat2/jgisummarizebamcontigdepths/blobs/sha256:9d4550d866b4cedcf7fbe4fabb57a1f20d3e6e6a89c04a9c6904772081ef5c3a |
| Size | 2.4 KB |
| Checksum | sha256:9d4550d866b4cedcf7fbe4fabb57a1f20d3e6e6a89c04a9c6904772081ef5c3a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:30:06 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:27 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:17:12 (UTC) | 3 | 2.4 KB |