nf-core/mifaser @ 0.0.0-eac429d
Summary
Functional annotation of metagenomic reads by assigning enzyme commission (EC) numbers
Get started
Add the following snippet to your workflow script to include this module.
include { MIFASER } from 'nf-core/mifaser'
License
MIT License
Process
Name
|
MIFASER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
reads
file
|
Single-end or paired-end FASTQ files. Use meta.single_end to indicate input type. *.{fastq,fastq.gz,fq,fq.gz}
|
db
directory
|
Path to the mi-faser database folder |
|---|
Output
4 channels
#1
analysis
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*analysis.tsv
file
|
TSV file with per-sample functional analysis summary *analysis.tsv
|
#2
multi_ec
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*multi_ec.tsv
file
|
TSV file with multi-EC functional assignments per read *multi_ec.tsv
|
#3
ec_counts
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*ec_count.tsv
file
|
TSV file with EC number counts *ec_count.tsv
|
#4
versions_mifaser
tuple
${task.process}
string
|
Process name |
|---|---|
mi-faser
string
|
Tool name |
mifaser --version 2>&1 | sed 's/* v//'
eval
|
mifaser version string |
| Tool | Description | Homepage |
|---|---|---|
| mifaser | mi-faser: microsecond functional annotation of sequences, a massive scalability upgrade | https://sourceforge.net/projects/mifaser/ |
| Version | 0.0.0-eac429d |
|---|---|
| Commit ID | eac429d4c67ac5114ce7d4287d460d8f05fd9fab |
| Release Date | 20 May 2026 15:01:20 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmifaser/0.0.0-eac429d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mifaser/blobs/sha256:0013c8de4422f1e7fba0b4fc3429e849b54b5b2cf99bc69970d83b030fe2cf53 |
| Size | 2.8 KB |
| Checksum | sha256:0013c8de4422f1e7fba0b4fc3429e849b54b5b2cf99bc69970d83b030fe2cf53 |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-eac429d | 20 May 2026 15:01:20 (UTC) | 0 | 2.8 KB | - |