nf-core/mindagap/duplicatefinder @ 0.0.0-3fc6d40
Summary
marks duplicate spots along gridline edges.
Get started
Add the following snippet to your workflow script to include this module.
include { MINDAGAP_DUPLICATEFINDER } from 'nf-core/mindagap/duplicatefinder'
License
MIT License
Process
Name
|
MINDAGAP_DUPLICATEFINDER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
spot_table
file
|
tsv file containing one spot per row with order x,y,z,gene without column header. *.{tsv,txt}
|
Output
2 channels
#1
marked_dups_spots
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*markedDups.txt
file
|
tab-separated text file containing one spot per row, with duplicated spots labeled with "Duplicated" in their gene column. *.{markedDups.txt}
|
#2
versions_mindagap
tuple
${task.process}
string
|
The name of the process |
|---|---|
mindagap
string
|
The name of the tool |
mindagap.py test -v
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mindagap | Takes a single panorama image and fills the empty grid lines with neighbour-weighted values. | https://github.com/ViriatoII/MindaGap/blob/main/README.md |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:21:48 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmindagap%2Fduplicatefinder/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mindagap/duplicatefinder/blobs/sha256:d52f713956bac4e5af91b9b89d510a3005f74e7cb224535e3947e64927a72474 |
| Size | 2.4 KB |
| Checksum | sha256:d52f713956bac4e5af91b9b89d510a3005f74e7cb224535e3947e64927a72474 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:30:33 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:48 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:17:52 (UTC) | 2 | 2.3 KB |