nf-core/miniasm @ 0.0.0-6c4ed3a
Summary
A very fast OLC-based de novo assembler for noisy long reads
Get started
Add the following snippet to your workflow script to include this module.
include { MINIASM } from 'nf-core/miniasm'
License
MIT License
Process
Name
|
MINIASM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input PacBio/ONT FastQ files. *.{fastq,fastq.gz,fq,fq.gz}
|
paf
file
|
Alignment in PAF format *{.paf,.paf.gz}
|
Output
3 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gfa.gz
file
|
Assembly graph *.gfa.gz
|
#2
assembly
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fasta.gz
file
|
Genome assembly *.fasta.gz
|
#3
versions_miniasm
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
miniasm
string
|
The tool name |
miniasm -V 2>&1
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| miniasm | Ultrafast de novo assembly for long noisy reads (though having no consensus step) | https://github.com/lh3/miniasm |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:30:37 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fminiasm/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/miniasm/blobs/sha256:d446111c5ba4f5ac1d603a420fa9ebee5e175bbbeec9fdd146c09766010bf34f |
| Size | 2.5 KB |
| Checksum | sha256:d446111c5ba4f5ac1d603a420fa9ebee5e175bbbeec9fdd146c09766010bf34f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:30:37 (UTC) | 1 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:51 (UTC) | 1 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:17:57 (UTC) | 1 | 2.4 KB |