nf-core/minimac4/compressref @ 0.0.0-0c7146d
Summary
Compression of a reference panel for genotype imputation to .msav format
Get started
Add the following snippet to your workflow script to include this module.
include { MINIMAC4_COMPRESSREF } from 'nf-core/minimac4/compressref'
License
MIT License
Process
Name
|
MINIMAC4_COMPRESSREF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
ref
file
|
Variant reference panel file *.{vcf,vcf.gz,bcf}
|
ref_index
file
|
Index file for the reference panel *.{tbi,csi}
|
Output
2 channels
#1
msav
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.msav
file
|
Multy-sample variant compressed file *.{msav}
|
#2
versions_minimac4
tuple
${task.process}
string
|
The name of the process |
|---|---|
minimac4
string
|
The name of the tool |
minimac4 --version |& sed '1!d ; s/minimac v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| minimac4 | Computationally efficient genotype imputation | https://github.com/statgen/Minimac4 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:17:59 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fminimac4%2Fcompressref/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/minimac4/compressref/blobs/sha256:9667e12c006b6a61abdbb28697f9bfb3563f4f8f9484206dc6277bb00eefe349 |
| Size | 2.3 KB |
| Checksum | sha256:9667e12c006b6a61abdbb28697f9bfb3563f4f8f9484206dc6277bb00eefe349 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:30:38 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:52 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:17:59 (UTC) | 3 | 2.3 KB |