nf-core/mmseqs/easysearch @ 0.0.0-0c7146d
Summary
Searches for the sequences of a fasta file in a database using MMseqs2
Get started
Add the following snippet to your workflow script to include this module.
include { MMSEQS_EASYSEARCH } from 'nf-core/mmseqs/easysearch'
License
MIT License
Process
Name
|
MMSEQS_EASYSEARCH |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing input fasta file information e.g. |
|---|---|
fasta
file
|
Fasta file *.{fa,fasta}
|
#2
tuple
meta2
map
|
Groovy Map containing database information e.g. |
|---|---|
db_target
directory
|
an MMseqs2 database with target data, e.g. uniref90 |
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing input fasta file information e.g. |
|---|---|
${prefix}.tsv
file
|
tsv file with the results of the search *.{tsv}
|
#2
versions_mmseqs
tuple
${task.process}
string
|
The name of the process |
|---|---|
mmseqs
string
|
The name of the tool |
mmseqs version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mmseqs | MMseqs2: ultra fast and sensitive sequence search and clustering suite | https://github.com/soedinglab/MMseqs2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:18:45 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Feasysearch/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mmseqs/easysearch/blobs/sha256:d560e5e1de544c7c33a82592a5bbacbd263ea48360974e55592c8f0ad8c0daae |
| Size | 2.7 KB |
| Checksum | sha256:d560e5e1de544c7c33a82592a5bbacbd263ea48360974e55592c8f0ad8c0daae |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:31:55 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:18:45 (UTC) | 3 | 2.7 KB |