nf-core/mmseqs/taxonomy @ 0.0.0-6c4ed3a
Summary
Computes the lowest common ancestor by identifying the query sequence homologs against the target database.
Get started
Add the following snippet to your workflow script to include this module.
include { MMSEQS_TAXONOMY } from 'nf-core/mmseqs/taxonomy'
License
MIT License
Process
Name
|
MMSEQS_TAXONOMY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
db_query
directory
|
An MMseqs2 database with query data |
db_target
directory
|
an MMseqs2 database with target data including the taxonomy classification |
|---|
Output
2 channels
#1
db_taxonomy
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}_taxonomy
directory
|
An MMseqs2 database with target data including the taxonomy classification |
#2
versions_mmseqs
tuple
${task.process}
string
|
The name of the process |
|---|---|
mmseqs
string
|
The name of the tool |
mmseqs version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mmseqs | MMseqs2: ultra fast and sensitive sequence search and clustering suite | https://github.com/soedinglab/MMseqs2 |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:32:00 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Ftaxonomy/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mmseqs/taxonomy/blobs/sha256:99d002630b45680dbf3119e87cda80a4b8fa01c2e5d985319414d36f9c657ce5 |
| Size | 3.0 KB |
| Checksum | sha256:99d002630b45680dbf3119e87cda80a4b8fa01c2e5d985319414d36f9c657ce5 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:32:00 (UTC) | 4 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:18:52 (UTC) | 3 | 3.0 KB |