nf-core/modkit/bedmethyltobigwig @ 0.0.0-3fc6d40
Summary
Convert a bedMethyl file to bigWig format using modkit
Get started
Add the following snippet to your workflow script to include this module.
include { MODKIT_BEDMETHYLTOBIGWIG } from 'nf-core/modkit/bedmethyltobigwig'
License
MIT License
Process
Name
|
MODKIT_BEDMETHYLTOBIGWIG |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bedmethyl
file
|
bedMethyl file *.{bed,bed.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing genome information e.g. |
|---|---|
chromsizes
file
|
Tab-separated file with chromosome names and sizes or fai index *.{tsv,fai}
|
modcodes
list
|
List of modification codes to include in the output bigWig file. Can be either a list of strings or a string containing a comma-separated list. |
|---|
Output
2 channels
#1
bw
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.bw
file
|
bigWig file *.{bw}
|
#2
versions_modkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
modkit
string
|
The name of the tool |
modkit --version | sed 's/modkit //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| modkit | A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data. | https://nanoporetech.github.io/modkit/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:22:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmodkit%2Fbedmethyltobigwig/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/modkit/bedmethyltobigwig/blobs/sha256:bfe6e72f62fdd791b26315201acb3fe86a44d0a8c3a15ebeaff57deba663e56f |
| Size | 2.7 KB |
| Checksum | sha256:bfe6e72f62fdd791b26315201acb3fe86a44d0a8c3a15ebeaff57deba663e56f |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:32:05 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:22:50 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:18:59 (UTC) | 4 | 2.7 KB |