Nextflow Registry | nf-core/ngmerge@0.0.0-3fc6d40

nf-core/ngmerge @ 0.0.0-3fc6d40

Merging paired-end reads and removing sequencing adapters.

sort reads merging merge mate pairs

Latest version: 0.0.0-6c4ed3a

Total downloads: 7

Source: nf-core/modules

Authors: @charlotteanne @jsh58

Maintainers: @charlotteanne @jsh58

Merging paired-end reads and removing sequencing adapters.

Add the following snippet to your workflow script to include this module.

include { NGMERGE } from 'nf-core/ngmerge'

MIT License

Process

`Name`	`NGMERGE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`reads` file	List of input FastQ files of size 2; i.e., paired-end data. `*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}`

Output 4 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 merged_reads tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.merged.fq.gz` file	fastq file merged reads `*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}`

#3 unstitched_read1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*_1.fastq.gz` file	fastq file unstitched read 1 `*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}`

#4 unstitched_read2 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*_2.fastq.gz` file	fastq file unstitched read 2 `*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}`

Tool	Description	Homepage
ngmerge	Merging paired-end reads and removing sequencing adapters.	https://github.com/jsh58/NGmerge

Version	0.0.0-3fc6d40
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	22 Apr 2026 15:23:33 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fngmerge/0.0.0-3fc6d40/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ngmerge/blobs/sha256:06d5b7440f637326eb8a243d7f0a60d36863abb2f4f69e01d1d7999cc0cb3aec
Size	2.3 KB
Checksum	sha256:06d5b7440f637326eb8a243d7f0a60d36863abb2f4f69e01d1d7999cc0cb3aec
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:33:04 (UTC)	3	2.2 KB
0.0.0-3fc6d40	22 Apr 2026 15:23:33 (UTC)	3	2.3 KB
0.0.0-0c7146d	08 Apr 2026 19:21:16 (UTC)	1	2.2 KB