nf-core/odgi/squeeze @ 0.0.0-6c4ed3a
Summary
Squeezes multiple graphs in ODGI format into the same file in ODGI format.
Get started
Add the following snippet to your workflow script to include this module.
include { ODGI_SQUEEZE } from 'nf-core/odgi/squeeze'
License
MIT License
Process
Name
|
ODGI_SQUEEZE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
graphs
file
|
Pangenome graph files in ODGI format. *.{og}
|
Output
2 channels
#1
graph
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.og
file
|
Squeezed pangenome graph in ODGI format. *.{og}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| odgi | An optimized dynamic genome/graph implementation | https://github.com/pangenome/odgi |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:33:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fodgi%2Fsqueeze/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/odgi/squeeze/blobs/sha256:b34279c92ca6751a0da56eb51dcde6a90676fd2d7a7bfed6c9493188dbf8d4cf |
| Size | 2.1 KB |
| Checksum | sha256:b34279c92ca6751a0da56eb51dcde6a90676fd2d7a7bfed6c9493188dbf8d4cf |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:33:28 (UTC) | 3 | 2.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:23:54 (UTC) | 4 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:21:56 (UTC) | 3 | 2.0 KB |