nf-core/orfipy @ 0.0.0-6c4ed3a
Summary
orfipy is a tool written in python/cython to extract ORFs in an extremely and fast and flexible manner.
Get started
Add the following snippet to your workflow script to include this module.
include { ORFIPY } from 'nf-core/orfipy'
License
MIT License
Process
Name
|
ORFIPY |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', fasta ] |
|---|---|
infile
file
|
Input file, in plain Fasta/Fastq or gzipped format, containing Nucletide sequences *.{fasta,fa,fastq,fastq.gz,fq,fa.gz,fq.gz}
|
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', fasta ] |
|---|---|
${prefix}/${prefix}.bed
file
|
Output BED file containing the coordinates of predicted ORFs |
#2
versions_orfipy
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
orfipy
string
|
The tool name |
orfipy --version | sed 's/.*version //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| orfipy | orfipy: fast and flexible search for open reading frames in fasta sequences | https://github.com/urmi-21/orfipy |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:34:42 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Forfipy/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/orfipy/blobs/sha256:0dd90ef7e6c811b2ce61241f14badb2f7a14ce6b0c4b6c724d99272943e04b10 |
| Size | 2.2 KB |
| Checksum | sha256:0dd90ef7e6c811b2ce61241f14badb2f7a14ce6b0c4b6c724d99272943e04b10 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:34:42 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:24:21 (UTC) | 4 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:22:35 (UTC) | 4 | 2.2 KB |