nf-core/paftools/sam2paf @ 0.0.0-6c4ed3a
Summary
A program to convert bam into paf.
Get started
Add the following snippet to your workflow script to include this module.
include { PAFTOOLS_SAM2PAF } from 'nf-core/paftools/sam2paf'
License
MIT License
Process
Name
|
PAFTOOLS_SAM2PAF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
An input bam file to be converted into paf. |
Output
3 channels
#1
paf
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|
#2
versions_paftools
tuple
${task.process}
string
|
Name of the process |
|---|---|
paftools
string
|
Name of the tool |
paftools.js version
eval
|
The expression to obtain the version of the tool |
#3
versions_samtools
tuple
${task.process}
string
|
Name of the process |
|---|---|
samtools
string
|
Name of the tool |
samtools version | sed '1!d;s/.* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| paftools | A program to manipulate paf files / convert to and from paf. | https://github.com/lh3/minimap2 |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:34:45 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpaftools%2Fsam2paf/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/paftools/sam2paf/blobs/sha256:b7e6a2265e6a3d34a0d24c9b2e277d96280cf6dcbc5a568d881a862a718950b5 |
| Size | 2.2 KB |
| Checksum | sha256:b7e6a2265e6a3d34a0d24c9b2e277d96280cf6dcbc5a568d881a862a718950b5 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:34:45 (UTC) | 4 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:22:40 (UTC) | 3 | 2.2 KB |