Nextflow Modules
Showing module(s) with keyword "paf"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/fastga/fastga | Process | genome alignment paf onecode psl comparative genomics | Compare two genomes or a genome against itself and output a .1aln, .paf, or .psl file of all alignments found. |
| nf-core/minimap2/align | Process | align fasta fastq genome paf reference | A versatile pairwise aligner for genomic and spliced nucleotide sequences |
| nf-core/miniprot/align | Process | align fasta protein genome paf gff | A versatile pairwise aligner for genomic and spliced nucleotide sequences |
| nf-core/mm2plus/align | Process | align fasta fastq genome paf reference | A versatile pairwise aligner for genomic and spliced nucleotide sequences |
| nf-core/paftools/sam2paf | Process | paf bam conversion | A program to convert bam into paf. |
| nf-core/seqwish/induce | Process | induce paf gfa graph variation graph | Induce a variation graph in GFA format from alignments in PAF format |