nf-core/pairtools/sort @ 0.0.0-6c4ed3a
Summary
Sort a .pairs/.pairsam file
Get started
Add the following snippet to your workflow script to include this module.
include { PAIRTOOLS_SORT } from 'nf-core/pairtools/sort'
License
MIT License
Process
Name
|
PAIRTOOLS_SORT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
A pairs file |
Output
2 channels
#1
sorted
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pairs.gz
file
|
Sorted pairs file *.{pairs.gz}
|
#2
versions_pairtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
pairtools
string
|
The name of the tool |
pairtools --version | sed 's/.*pairtools.*version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| pairtools | CLI tools to process mapped Hi-C data | http://pairtools.readthedocs.io/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:34:55 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpairtools%2Fsort/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pairtools/sort/blobs/sha256:b9029a61328ee11025c766475d57a5e2e834200883a4eb0d90e9ce8fddbd2f9a |
| Size | 2.2 KB |
| Checksum | sha256:b9029a61328ee11025c766475d57a5e2e834200883a4eb0d90e9ce8fddbd2f9a |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:34:55 (UTC) | 4 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:25:05 (UTC) | 4 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:23:40 (UTC) | 3 | 2.2 KB |