Nextflow Modules
Showing module(s) with keyword "pairs"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/pairix | Process | index block-compressed pairs | a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates |
| nf-core/pairtools/dedup | Process | dedup deduplication PCR/optical duplicates pairs | Find and remove PCR/optical duplicates |
| nf-core/pairtools/flip | Process | flip pairs upper-triangular matrix | Flip pairs to get an upper-triangular matrix |
| nf-core/pairtools/merge | Process | merge pairs pairsam | Merge multiple pairs/pairsam files |
| nf-core/pairtools/restrict | Process | pairs pairstools restriction fragments | Assign restriction fragments to pairs |
| nf-core/pairtools/select | Process | select pairs filter | Select pairs according to given condition by options.args |
| nf-core/pairtools/sort | Process | sort pairs pairsam | Sort a .pairs/.pairsam file |
| nf-core/pairtools/split | Process | split pairs bam | Split a .pairsam file into .pairs and .sam. |
| nf-core/pairtools/stats | Process | stats pairs pairsam | Calculate pairs statistics |