nf-core/pangolin/run @ 0.0.0-6c4ed3a
Summary
Phylogenetic Assignment of Named Global Outbreak LINeages
Get started
Add the following snippet to your workflow script to include this module.
include { PANGOLIN_RUN } from 'nf-core/pangolin/run'
License
MIT License
Process
Name
|
PANGOLIN_RUN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
fasta
file
|
The genome assembly to be evaluated |
db
directory
|
Directory containing the Pangolin database |
|---|
Output
2 channels
#1
report
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.csv
file
|
Pangolin lineage report *.{csv}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pangolin | Phylogenetic Assignment of Named Global Outbreak LINeages | https://github.com/cov-lineages/pangolin#pangolearn-description |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:35:04 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpangolin%2Frun/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pangolin/run/blobs/sha256:8aeed70d469a8e5ddcf7d425dc8ff5bfc7d39fb978303c0d74c01eb40318f384 |
| Size | 2.6 KB |
| Checksum | sha256:8aeed70d469a8e5ddcf7d425dc8ff5bfc7d39fb978303c0d74c01eb40318f384 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:35:04 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:23:51 (UTC) | 2 | 2.5 KB |