nf-core/pangolin/updatedata @ 0.0.0-0c7146d
Summary
Phylogenetic Assignment of Named Global Outbreak LINeages
Get started
Add the following snippet to your workflow script to include this module.
include { PANGOLIN_UPDATEDATA } from 'nf-core/pangolin/updatedata'
License
MIT License
Process
Name
|
PANGOLIN_UPDATEDATA |
|---|
Input
1 channel
dbname
string
|
Name of directory to store the most recent pangolin dataset. |
|---|
Output
2 channels
#1
db
${prefix}
file
|
Directory containing downloaded data with directory naming being the user provided dbname or prefix. |
|---|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pangolin | Phylogenetic Assignment of Named Global Outbreak LINeages | https://github.com/cov-lineages/pangolin#pangolearn-description |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:23:53 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpangolin%2Fupdatedata/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pangolin/updatedata/blobs/sha256:57bee819317214c8250feef6d5eee99dc3e34ee570842471e6c31187f728a839 |
| Size | 2.1 KB |
| Checksum | sha256:57bee819317214c8250feef6d5eee99dc3e34ee570842471e6c31187f728a839 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:35:05 (UTC) | 3 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:23:53 (UTC) | 1 | 2.1 KB |