nf-core/paragraph/vcf2paragraph @ 0.0.0-6c4ed3a
Summary
Convert a VCF file to a JSON graph
Get started
Add the following snippet to your workflow script to include this module.
include { PARAGRAPH_VCF2PARAGRAPH } from 'nf-core/paragraph/vcf2paragraph'
License
MIT License
Process
Name
|
PARAGRAPH_VCF2PARAGRAPH |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
The VCF/BCF file *.{vcf,bcf}(.gz)?
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Reference genome VCF was generated against *.{fasta,fna,fa}
|
Output
2 channels
#1
graph
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.json.gz
file
|
The created graph in BGZIP format *.json.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| paragraph | Graph realignment tools for structural variants | https://github.com/Illumina/paragraph |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:35:10 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fparagraph%2Fvcf2paragraph/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/paragraph/vcf2paragraph/blobs/sha256:c9cbd50a91b561fbf01f1da0100503087f92c2a4a4005533c390d02467393d7a |
| Size | 2.6 KB |
| Checksum | sha256:c9cbd50a91b561fbf01f1da0100503087f92c2a4a4005533c390d02467393d7a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:35:10 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:25:17 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:24:23 (UTC) | 2 | 2.6 KB |