Nextflow Modules
Showing module(s) with keyword "json"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/assemblyscan | Process | assembly statistics summary json | Assembly summary statistics in JSON format |
| nf-core/bamtools/convert | Process | bamtools bamtools/convert bam convert bed fasta fastq json pileup sam yaml | BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. |
| nf-core/ensemblvep/vep | Process | annotation vcf json tab | Ensembl Variant Effect Predictor (VEP). The output-file-format is controlled through `task.ext.args`. |
| nf-core/expansionhunter | Process | STR repeat_expansions bam cram vcf json | Estimate repeat sizes using NGS data |
| nf-core/gemmi/cif2json | Process | structure mmcif cif json structural-biology | Convert macromolecular structure files from mmCIF format to JSON format using gemmi. |
| nf-core/mat2json | Process | file conversion matlab json csv | converst matlab .mat files into json or csv files. |
| nf-core/paragraph/multigrmpy | Process | vcf json structural variants graphs genotyping | Genotype structural variants using paragraph and grmpy |
| nf-core/paragraph/vcf2paragraph | Process | vcf json structural_variants | Convert a VCF file to a JSON graph |