nf-core/pbbam/pbmerge @ 0.0.0-0c7146d
Summary
The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities.
Get started
Add the following snippet to your workflow script to include this module.
include { PBBAM_PBMERGE } from 'nf-core/pbbam/pbmerge'
License
MIT License
Process
Name
|
PBBAM_PBMERGE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM files to merge *.bam
|
Output
3 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
The merged bam file *.bam
|
#2
pbi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pbi
file
|
BAM Pacbio index file *.bam.pbi
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pbbam | PacBio BAM C++ library | https://github.com/PacificBiosciences/pbbioconda |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:24:29 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpbbam%2Fpbmerge/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pbbam/pbmerge/blobs/sha256:f944fb898e5846e0cb294b5f047d2d00cf3e4c5a2ed98445fd4589e08a3f62dd |
| Size | 2.5 KB |
| Checksum | sha256:f944fb898e5846e0cb294b5f047d2d00cf3e4c5a2ed98445fd4589e08a3f62dd |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:35:15 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:25:19 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:24:29 (UTC) | 4 | 2.5 KB |