nf-core/pbjasmine @ 0.0.0-3fc6d40
Summary
Identify specific base modifications in PacBio HiFi reads by analyzing polymerase kinetic signatures
Get started
Add the following snippet to your workflow script to include this module.
include { PBJASMINE } from 'nf-core/pbjasmine'
License
MIT License
Process
Name
|
PBJASMINE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
BAM/CRAM file *.{bam,cram}
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.bam
file
|
Consensus reads with jasmine modification calls *.bam
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pbjasmine | Call select base modifications in PacBio HiFi reads. | https://github.com/pacificbiosciences/jasmine |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:25:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpbjasmine/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pbjasmine/blobs/sha256:dc895de418d851ecf4cc87feabfa33b64f163a5540d35ef181313396e96ebfc2 |
| Size | 2.4 KB |
| Checksum | sha256:dc895de418d851ecf4cc87feabfa33b64f163a5540d35ef181313396e96ebfc2 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:35:19 (UTC) | 4 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:25:23 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:24:35 (UTC) | 3 | 2.3 KB |