Nextflow Registry | nf-core/pbsv/call@0.0.0-6c4ed3a

nf-core/pbsv/call @ 0.0.0-6c4ed3a

pbsv/call - PacBio structural variant (SV) calling and analysis tools

variant pacbio genomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 7

Source: nf-core/modules

Authors: @tanyasarkjain

Maintainers: @tanyasarkjain

pbsv/call - PacBio structural variant (SV) calling and analysis tools

Add the following snippet to your workflow script to include this module.

include { PBSV_CALL } from 'nf-core/pbsv/call'

MIT License

Process

`Name`	`PBSV_CALL`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`svsig` file	structural variant file

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'reference']`
`fasta` file	fasta file used as reference

Output 2 channels

#1 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.vcf` file	structural variant file

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
pbsv	pbsv - PacBio structural variant (SV) calling and analysis tools	https://github.com/PacificBiosciences/

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:35:24 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fpbsv%2Fcall/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pbsv/call/blobs/sha256:922cb6ec04627faca285da095feb5ba0145301b00d6f8c20726194fb25918dcc
Size	2.4 KB
Checksum	sha256:922cb6ec04627faca285da095feb5ba0145301b00d6f8c20726194fb25918dcc
Downloads	4

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:35:24 (UTC)		4	2.4 KB
0.0.0-0c7146d	08 Apr 2026 19:24:42 (UTC)		3	2.4 KB