nf-core/plink/extract @ 0.0.0-6c4ed3a
Summary
Subset plink bfiles with a text file of variant identifiers
Get started
Add the following snippet to your workflow script to include this module.
include { PLINK_EXTRACT } from 'nf-core/plink/extract'
License
MIT License
Name
|
PLINK_EXTRACT |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
PLINK binary biallelic genotype table *.{bed}
|
bim
file
|
PLINK extended MAP file *.{bim}
|
fam
file
|
PLINK sample information file *.{fam}
|
variants
file
|
A text file containing variant identifiers to keep (one per line) *.{keep}
|
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
PLINK binary biallelic genotype table *.{bed}
|
bim
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bim
file
|
PLINK extended MAP file *.{bim}
|
fam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fam
file
|
PLINK sample information file *.{fam}
|
versions_plink
tuple
${task.process}
string
|
The name of the process |
|---|---|
plink
string
|
The name of the tool |
plink --version 2>&1 | sed 's/^PLINK v//;s/ .*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| plink | Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. | https://www.cog-genomics.org/plink |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:37:43 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fplink%2Fextract/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/plink/extract/blobs/sha256:e74544f6f291bf24d56a5b72e258a6e0bd4d7e04598e3936199fd72fdc4e7faa |
| Size | 3.0 KB |
| Checksum | sha256:e74544f6f291bf24d56a5b72e258a6e0bd4d7e04598e3936199fd72fdc4e7faa |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:37:43 (UTC) | 4 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:26:50 (UTC) | 4 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:26:39 (UTC) | 2 | 3.0 KB |