Nextflow Modules
Showing module(s) with keyword "subset"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/gridss/extractoverlappingfragments | Process | gridss bam subset target structural variants | Extract read fragments from a BAM file whose reads overlap a set of target regions, producing a subset BAM for targeted GRIDSS structural variant calling. |
| nf-core/octopusv/subset | Process | structural variant sv svcf subset | Subset an OctopuSV SVCF by sample and/or caller. |
| nf-core/picard/splitsambynumberofreads | Process | split parallel bam subset downsample sam cram | Splits a SAM/BAM/CRAM file to multiple files. This tool splits the input query-grouped SAM/BAM/CRAM file into multiple files while maintaining the sort order. This can be used to split a large unmapped input in order to parallelize alignment. |
| nf-core/plink/extract | Process | extract plink subset bfiles | Subset plink bfiles with a text file of variant identifiers |
| nf-core/seqkit/head | Process | filter subset reads fasta fastq seqkit | Subset FASTA/FASTQ files to some number of sequences |
| nf-core/seqkit/sample | Process | genomics fasta fastq sample subset seqkit | Sample sequences from FASTA/FASTQ files by number or proportion |