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nf-core/plink2/remove @ 0.0.0-6c4ed3a

Remove samples from a plink2 dataset

plink2 remove samples population genomics
Latest version: 0.0.0-6c4ed3a
Total downloads: 8
Source: nf-core/modules
Authors: @RuthEberhardt
Maintainers: @RuthEberhardt

Summary

Remove samples from a plink2 dataset

Get started

Add the following snippet to your workflow script to include this module.

include { PLINK2_REMOVE } from 'nf-core/plink2/remove'

License

MIT License

Process
Name PLINK2_REMOVE
Input 2 channels
#1 tuple
meta map

Groovy Map containing sample information e.g. [ id:'test' ]
plink_genotype_file file

PLINK binary genotype table file or PLINK 2 binary genotype table file

 *.{bed,pgen}
plink_variant_file file

PLINK extended MAP file or PLINK 2 variant information file

 *.{bim,pvar}
plink_sample_file file

PLINK sample information file or PLINK 2 sample information file

 *.{fam,psam}
sample_exclude_list file

List of samples to exclude
Output 7 channels
#1 versions
versions.yml file

File containing software versions

 versions.yml
#2 remove_bed tuple
meta map

Groovy Map containing sample information e.g. [ id:'test' ]
*.bed file

PLINK binary genotype table file

 *.bed
#3 remove_bim tuple
meta map

Groovy Map containing sample information e.g. [ id:'test' ]
*.bim file

PLINK extended MAP file

 *.bim
#4 remove_fam tuple
meta map

Groovy Map containing sample information e.g. [ id:'test' ]
*.fam file

PLINK sample information file

 *.fam
#5 remove_pgen tuple
meta map

Groovy Map containing sample information e.g. [ id:'test' ]
*.pgen file

PLINK 2 binary genotype table file

 *.{pgen}
#6 remove_psam tuple
meta map

Groovy Map containing sample information e.g. [ id:'test' ]
*.psam file

PLINK 2 sample information file

 *.{psam}
#7 remove_pvar tuple
meta map

Groovy Map containing sample information e.g. [ id:'test' ]
*.pvar file

PLINK 2 variant information file

 *.{pvar}
Tool Description Homepage
plink2 Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner http://www.cog-genomics.org/plink/2.0/
Version 0.0.0-6c4ed3a
Commit ID 6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date 23 Apr 2026 15:38:01 (UTC)
Download URL https://registry.nextflow.io/api/v1/modules/nf-core%2Fplink2%2Fremove/0.0.0-6c4ed3a/download
OCI Store URL https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/plink2/remove/blobs/sha256:c7a96ac26c043e205ac8a5c6280c979012c513e035b442d5704a0c7149d27f95
Size 3.2 KB
Checksum sha256:c7a96ac26c043e205ac8a5c6280c979012c513e035b442d5704a0c7149d27f95
Downloads 3
Version