Nextflow Modules
Showing module(s) with keyword "plink2"
| Module | Keywords | Description |
|---|---|---|
| nf-core/plink2/extract | plink2 extract identifiers | Subset plink pfiles with a text file of variant identifiers |
| nf-core/plink2/filter | plink2 filter samples variants missingness qualty | Filters plink bfiles or pfiles with filters such as maf or var |
| nf-core/plink2/het | plink2 inbreeding heterozygous genotypes homozygous genotypes f coefficient population genomics | Calculate Inbreeding data with plink2 |
| nf-core/plink2/indeppairwise | plink2 linkage equilibrium pruning | Produce pruned set of variants in approximatelinkage equilibrium |
| nf-core/plink2/pca | plink2 pca plink2_pca | Perform PCA analysis using PLINK |
| nf-core/plink2/remove | plink2 remove samples population genomics | Remove samples from a plink2 dataset |
| nf-core/plink2/score | plink2 score scoring | Apply a scoring system to each sample in a plink 2 fileset |
| nf-core/plink2/vcf | plink2 import variant genetic | Import variant genetic data using plink2 |
| nf-core/plink2/vcf2bgen | plink2 bgen file vcf file genotype dosages | Convert from VCF file to BGEN file version 1.2 format preserving dosages. |