Nextflow Registry | nf-core/primerprospector/analyzeprimers@0.0.0-bf60969

nf-core/primerprospector/analyzeprimers @ 0.0.0-bf60969

Score PCR primers for binding to target sequences

primer design pcr fasta sequence analysis primer scoring

Latest version: 0.0.0-bf60969

Total downloads: 0

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Score PCR primers for binding to target sequences

Add the following snippet to your workflow script to include this module.

include { PRIMERPROSPECTOR_ANALYZEPRIMERS } from 'nf-core/primerprospector/analyzeprimers'

MIT License

Process

`Name`	`PRIMERPROSPECTOR_ANALYZEPRIMERS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information. Mandatory. e.g. `[ id:'sample1' ]`
`fasta` file	Target FASTA file or files to score primers against. Mandatory. `*.{fasta,fa,fna}`
`primers` file	Tab-delimited primers file containing primer names and sequences. Optional when primer name and sequence are supplied with task.ext.args. `*.{txt,tsv}`

Output 3 channels

#1 hits tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*_hits.txt` file	Primer hit detail files, including mismatches, gaps, positions, and weighted scores. One file is produced per primer. `*_hits.txt`

#2 plots tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.ps` file	PostScript summary plots of primer mismatch and weighted score information. One file is produced per primer. `*.ps`

#3 versions_primerprospector tuple

`${task.process}` string	The name of the process
`primerprospector` string	The name of the tool
`analyze_primers.py --version 2>&1 \| grep -Eo '[0-9]+(\.[0-9]+)+' \| tail -n 1` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
primerprospector	Primer Prospector is a pipeline of programs to design and analyze PCR primers.	https://pprospector.sourceforge.net/

Version	0.0.0-bf60969
Commit ID	bf60969a3abb40d294cffd5105f574637bfa6260
Release Date	21 May 2026 15:00:56 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fprimerprospector%2Fanalyzeprimers/0.0.0-bf60969/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/primerprospector/analyzeprimers/blobs/sha256:6672adc6cab9700c0cd06efa2ddf4dfdf8bd16ed377cd309d00d872588c405e2
Size	3.5 KB
Checksum	sha256:6672adc6cab9700c0cd06efa2ddf4dfdf8bd16ed377cd309d00d872588c405e2
Downloads	0

Version	Date	Status	Downloads	Size	Diff
0.0.0-bf60969	21 May 2026 15:00:56 (UTC)		0	3.5 KB	-