nf-core/prodigal @ 0.0.0-0c7146d
Summary
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
Get started
Add the following snippet to your workflow script to include this module.
include { PRODIGAL } from 'nf-core/prodigal'
License
MIT License
Name
|
PRODIGAL |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
genome
file
|
fasta/fasta.gz file |
output_format
string
|
Output format ("gbk"/"gff"/"sqn"/"sco") |
|---|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
amino_acid_fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.faa.gz
file
|
protein translations file *.{faa}
|
gene_annotations
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.${output_format}.gz
file
|
gene annotations in output_format given as input *.{output_format}
|
nucleotide_fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.fna.gz
file
|
nucleotide sequences file *.{fna}
|
all_gene_annotations
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}_all.txt.gz
file
|
complete starts file *.{_all.txt}
|
| Tool | Description | Homepage |
|---|---|---|
| prodigal | Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program | https://github.com/hyattpd/Prodigal |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:28:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fprodigal/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/prodigal/blobs/sha256:caef9357943d712b97de3cd2f2686dc3f613357ecd78bfa8478b9acc8af0b18a |
| Size | 2.8 KB |
| Checksum | sha256:caef9357943d712b97de3cd2f2686dc3f613357ecd78bfa8478b9acc8af0b18a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:38:29 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:33 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:28:28 (UTC) | 3 | 2.8 KB |