nf-core/proovframe/fix @ 0.0.0-3fc6d40
Summary
frame-shift correction for long read (meta)genomics - fix frameshifts in reads
Get started
Add the following snippet to your workflow script to include this module.
include { PROOVFRAME_FIX } from 'nf-core/proovframe/fix'
License
MIT License
Process
Name
|
PROOVFRAME_FIX |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fa
file
|
A FASTA file containing a database of guide protein sequences *.{faa,fasta,fa}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
tsv
file
|
Output TSV file from proovframe/map with the frameshift-aware protein to read alignments from proovframe/map *.{tsv}
|
Output
2 channels
#1
out_fa
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.fa
file
|
Result FASTA with fixed frameshift reads *.{fa}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| proovframe | frame-shift correction for long read (meta)genomics | https://github.com/thackl/proovframe |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:27:34 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fproovframe%2Ffix/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/proovframe/fix/blobs/sha256:51cd902eab731e3ca341a9974c94938c5a1d23ab0f8dac6c26630e7b27c7a2cc |
| Size | 2.4 KB |
| Checksum | sha256:51cd902eab731e3ca341a9974c94938c5a1d23ab0f8dac6c26630e7b27c7a2cc |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:38:32 (UTC) | 0 | 2.4 KB | ↔ | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:34 (UTC) | 0 | 2.4 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 19:28:32 (UTC) | 0 | 2.4 KB | - |