Nextflow Registry | nf-core/propr/grea@0.0.0-6c4ed3a

nf-core/propr/grea @ 0.0.0-6c4ed3a

Perform Gene Ratio Enrichment Analysis

Latest version: 0.0.0-6c4ed3a

Total downloads: 2

Source: nf-core/modules

Authors: @caraiz2001 @suzannejin

Maintainers: @caraiz2001 @suzannejin

Perform Gene Ratio Enrichment Analysis

Add the following snippet to your workflow script to include this module.

include { PROPR_GREA } from 'nf-core/propr/grea'

MIT License

Process

`Name`	`PROPR_GREA`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing data information. This can be used at the workflow level to pass optional parameters to the module. [id: 'test', ...]
`adjacency` file	Adjacency matrix representing the graph connections (ie. 1 for edges, 0 otherwise). This can be the adjacency matrix output from gene ratio approaches like propr/propd. `*.{csv,tsv}`

#2 tuple

`meta2` map	Groovy Map containing data information. This can be used at the workflow level to pass optional parameters to the module. [id: 'test', ...]
`gmt` file	A tab delimited file format that describes gene sets. The first column is the concept id (eg. GO term, pathway, etc), the second column is the concept description, and the rest are nodes (eg. genes) that is associated to the given concept. `*.{gmt}`

Output 3 channels

#1 results tuple

`meta` file	Groovy Map containing sample information. This can be used at the workflow level to pass optional parameters to the module. [id: 'test', ...]
`*.grea.tsv` file	Output file containing the information about the tested concepts (ie. gene sets) and enrichment statistics. `*.grea.tsv`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 session_info

`*.R_sessionInfo.log` file	dump of R SessionInfo `*.R_sessionInfo.log`

Tool	Description	Homepage
grea	Gene Ratio Enrichment Analysis	https://github.com/tpq/propr

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:38:35 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fpropr%2Fgrea/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/propr/grea/blobs/sha256:787562627210ab22d6c3f4220356350064be5a07954b690ed4b144b2d97d92c6
Size	6.1 KB
Checksum	sha256:787562627210ab22d6c3f4220356350064be5a07954b690ed4b144b2d97d92c6
Downloads	1

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:38:35 (UTC)		1	6.1 KB
0.0.0-0c7146d	08 Apr 2026 19:28:36 (UTC)		1	6.1 KB