nf-core/proteinortho @ 0.0.0-0c7146d
Summary
Proteinortho is a tool to detect orthologous genes within different species.
Get started
Add the following snippet to your workflow script to include this module.
include { PROTEINORTHO } from 'nf-core/proteinortho'
License
MIT License
Process
Name
|
PROTEINORTHO |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta_files
file
|
Input fasta files (proteomes or transcriptomes), at least 2 are needed *.{fa,fasta,faa,fna,fn}
|
Output
4 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
blastgraph
tuple
meta
file
|
Orthology table *.proteinortho.tsv
|
|---|---|
${prefix}.blast-graph
file
|
BLAST graph *.blast-graph
|
#3
orthologgraph
tuple
meta
file
|
Orthology table *.proteinortho.tsv
|
|---|---|
${prefix}.proteinortho-graph
file
|
Orthology graph *.proteinortho-graph
|
#4
orthologgroups
tuple
meta
file
|
Orthology table *.proteinortho.tsv
|
|---|---|
${prefix}.proteinortho.tsv
file
|
Orthology table *.proteinortho.tsv
|
| Tool | Description | Homepage |
|---|---|---|
| proteinortho | Proteinortho is a tool to detect orthologous genes within different species. | https://gitlab.com/paulklemm_PHD/proteinortho |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:28:48 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fproteinortho/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/proteinortho/blobs/sha256:250cb3af1dab39d2b542afc7d7a5b62205b7db3f733f3826984c21dc16577e01 |
| Size | 2.4 KB |
| Checksum | sha256:250cb3af1dab39d2b542afc7d7a5b62205b7db3f733f3826984c21dc16577e01 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:38:42 (UTC) | 5 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:39 (UTC) | 4 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:28:48 (UTC) | 3 | 2.4 KB |