nf-core/purgedups/calcuts @ 0.0.0-3fc6d40
Summary
Calculate coverage cutoffs to determine when to purge duplicated sequence.
Get started
Add the following snippet to your workflow script to include this module.
include { PURGEDUPS_CALCUTS } from 'nf-core/purgedups/calcuts'
License
MIT License
Process
Name
|
PURGEDUPS_CALCUTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
stat
file
|
Histogram of coverage *.stat
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.calcuts.log
file
|
Log file .calcuts.log
|
#2
cutoff
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.cutoffs
file
|
Cutoff file *.cutoffs
|
#3
versions_purgedups
tuple
${task.process}
string
|
The name of the process |
|---|---|
purge_dups
string
|
The name of the tool |
1.2.6
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| purgedups | Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth | https://github.com/dfguan/purge_dups |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:27:43 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpurgedups%2Fcalcuts/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/purgedups/calcuts/blobs/sha256:86e8925e8ae11d70a303df6e7d9e0ffb4e329b21215760dd37474f32f03dade8 |
| Size | 2.5 KB |
| Checksum | sha256:86e8925e8ae11d70a303df6e7d9e0ffb4e329b21215760dd37474f32f03dade8 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:38:50 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:43 (UTC) | 2 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:29:03 (UTC) | 3 | 2.5 KB |