nf-core/pychopper @ 0.0.0-0c7146d
Summary
Identify, orient and trim nanopore cDNA reads
Get started
Add the following snippet to your workflow script to include this module.
include { PYCHOPPER } from 'nf-core/pychopper'
License
MIT License
Process
Name
|
PYCHOPPER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastq
file
|
FastQ with reads from long read sequencing e.g. nanopore *.{fastq.gz}
|
Output
2 channels
#1
fastq
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] *.{fastq.gz}
|
|---|---|
*.out.fastq.gz
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] *.{fastq.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pychopper | A tool to identify, orient and rescue full length cDNA reads from nanopore data. | https://github.com/epi2me-labs/pychopper |
| gzip | Gzip reduces the size of the named files using Lempel-Ziv coding (LZ77). | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:29:15 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpychopper/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pychopper/blobs/sha256:e1b824644aa05616b6b8119b85aea7759a3c8939733cd4effd13b36f6ed9e2b2 |
| Size | 2.5 KB |
| Checksum | sha256:e1b824644aa05616b6b8119b85aea7759a3c8939733cd4effd13b36f6ed9e2b2 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:38:58 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:51 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:29:15 (UTC) | 4 | 2.5 KB |