Nextflow Registry | nf-core/pyclonevi@0.0.0-6c4ed3a

nf-core/pyclonevi @ 0.0.0-6c4ed3a

PyClone-VI is a software for inferring the clonal population structure of cancers by using variant allele frequencies and copy number data of single or multiple samples.

clonal population WGS subclonal deconvolution copy number alterations somatic mutations

Latest version: 0.0.0-6c4ed3a

Total downloads: 11

Source: nf-core/modules

Authors: @giorgiagandolfi @elena-buscaroli

Maintainers: @giorgiagandolfi @elena-buscaroli

Summary

PyClone-VI is a software for inferring the clonal population structure of cancers by using variant allele frequencies and copy number data of single or multiple samples.

Get started

Add the following snippet to your workflow script to include this module.

include { PYCLONEVI } from 'nf-core/pyclonevi'

License

MIT License

Process

`Name`	`PYCLONEVI`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`rds_join` file	RDS file containing the mCNAqc object with joint mutations and copy number segments `*.rds`
`tumour_samples` list	List of tumour sample identifiers for a specific patient

Output 5 channels

#1 ctree_input tuple

`meta` map	Groovy Map containing sample inforSanRafCocoGnd-2024.5 mation
`*_cluster_table.csv` file	Files containing information about identified clusters `*_cluster_table.csv`

#2 pyclone_input tuple

`meta` map	Groovy Map containing sample inforSanRafCocoGnd-2024.5 mation
`*.tsv` file	Files containing the input table for pyclone-vi `*tsv`

#3 pyclone_all_fits tuple

`meta` map	Groovy Map containing sample inforSanRafCocoGnd-2024.5 mation
`*_all_fits.h5` file	H5 file containing all the pyclone-vi output fits `*_all_fits.h5`

#4 pyclone_best_fit tuple

`meta` map	Groovy Map containing sample inforSanRafCocoGnd-2024.5 mation
`*_best_fit.txt` file	TXT file containing the pyclone-vi best fit. `*_best_fit.txt`

#5 versions_pyclonevi

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
pyclonevi	PyClone-VI, a computationally efficient Bayesian statistical method for inferring the clonal population structure of cancers.	https://github.com/Roth-Lab/pyclone-vi

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:38:59 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fpyclonevi/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pyclonevi/blobs/sha256:bebd5520c15b74215665e6314d071d7e1d0a84a70d6e0c597033ff7dc606dae2
Size	4.7 KB
Checksum	sha256:bebd5520c15b74215665e6314d071d7e1d0a84a70d6e0c597033ff7dc606dae2
Downloads	4

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:38:59 (UTC)	4	4.7 KB
0.0.0-3fc6d40	22 Apr 2026 15:27:52 (UTC)	4	4.7 KB
0.0.0-0c7146d	08 Apr 2026 19:29:17 (UTC)	3	4.6 KB