Nextflow Registry | nf-core/pygenprop/build@0.0.0-0c7146d

nf-core/pygenprop/build @ 0.0.0-0c7146d

Generate a Micromeda file containing pathway annotations for one or more genomes. Supporting InterProScan and protein sequence information can also be optionally incorporated.

genome properties functional annotation interproscan pathway analysis micromeda

Latest version: 0.0.0-6c4ed3a

Total downloads: 6

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Summary

Generate a Micromeda file containing pathway annotations for one or more genomes. Supporting InterProScan and protein sequence information can also be optionally incorporated.

Get started

Add the following snippet to your workflow script to include this module.

include { PYGENPROP_BUILD } from 'nf-core/pygenprop/build'

License

MIT License

Process

`Name`	`PYGENPROP_BUILD`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`ips` file	InterProScan TSV output file `*.tsv`

`gp_txt` file	Genome Properties flatfile (e.g. genomeProperties.txt) This file can be found on the original archived repository link below: https://raw.githubusercontent.com/ebi-pf-team/genome-properties/refs/heads/master/flatfiles/genomeProperties.txt `*.txt`

Output 3 channels

#1 meda tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.micro` file	Micromeda SQLite database containing Genome Properties assignments `*.micro`

#2 versions_python tuple

`${task.process}` string	The name of the process
`python` string	The name of the tool
`python -V \| sed "s/Python //g"` eval	The expression to obtain the version of the tool

#3 versions_pygenprop tuple

`${task.process}` string	The name of the process
`pygenprop` string	The name of the tool
`"1.1"` string	The expression to obtain the version of the tool

Tool	Description	Homepage
pygenprop	A python library for programmatic usage of EBI InterPro Genome Properties.	https://github.com/Micromeda/pygenprop

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 19:29:25 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fpygenprop%2Fbuild/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pygenprop/build/blobs/sha256:35ee7452c2ebe00bbe9a2e956d95b49b1d64f19406f3bab3b7a2d3bcf84df082
Size	2.8 KB
Checksum	sha256:35ee7452c2ebe00bbe9a2e956d95b49b1d64f19406f3bab3b7a2d3bcf84df082
Downloads	3

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:39:04 (UTC)		3	2.8 KB
0.0.0-0c7146d	08 Apr 2026 19:29:25 (UTC)		3	2.8 KB