nf-core/raw2ometiff @ 0.0.0-0c7146d
Summary
write your description here
Get started
Add the following snippet to your workflow script to include this module.
include { RAW2OMETIFF } from 'nf-core/raw2ometiff'
License
MIT License
Process
Name
|
RAW2OMETIFF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
zarr_dir
directory
|
Tile directory must contain a full pyramid in a Zarr container. *.{zarr}
|
Output
3 channels
#1
ometiff
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.ome.tiff
file
|
OME-TIFF pyramid *.ome.tiff
|
#2
versions_bioformats
tuple
${task.process}
string
|
The name of the process |
|---|---|
bioformats
string
|
The name of the tool |
raw2ometiff --version |& sed -n "2s/Bio-Formats version = //p"
eval
|
The expression to obtain the version of the tool |
#3
versions_raw2ometiff
tuple
${task.process}
string
|
The name of the process |
|---|---|
raw2ometiff
string
|
The name of the tool |
raw2ometiff --version |& sed -n "1s/Version = //p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| raw2ometiff | Java application to convert a directory of tiles to an OME-TIFF pyramid. | https://github.com/glencoesoftware/raw2ometiff |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:30:24 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fraw2ometiff/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/raw2ometiff/blobs/sha256:d872e253595f9328ab57c70c146796e86546610094c8c0d70fe3a38ad16ca2cf |
| Size | 2.3 KB |
| Checksum | sha256:d872e253595f9328ab57c70c146796e86546610094c8c0d70fe3a38ad16ca2cf |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:40:33 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:30:24 (UTC) | 1 | 2.3 KB |