nf-core/repeatmasker/rmouttogff3 @ 0.0.0-0c7146d
Summary
A utility script to assist to convert old RepeatMasker *.out files to version 3 gff files.
Get started
Add the following snippet to your workflow script to include this module.
include { REPEATMASKER_RMOUTTOGFF3 } from 'nf-core/repeatmasker/rmouttogff3'
License
MIT License
Process
Name
|
REPEATMASKER_RMOUTTOGFF3 |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
out
file
|
RepeatMasker out file *.{out}
|
Output
2 channels
#1
gff3
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.gff3
file
|
Sorted BAM/CRAM/SAM file *.{gff3}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| repeatmasker | RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences | https://www.repeatmasker.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:30:33 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frepeatmasker%2Frmouttogff3/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/repeatmasker/rmouttogff3/blobs/sha256:7532b6179f14bbd9a7dde0359133c326576364c3b47a17d97db0013da261b108 |
| Size | 2.5 KB |
| Checksum | sha256:7532b6179f14bbd9a7dde0359133c326576364c3b47a17d97db0013da261b108 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:40:39 (UTC) | 4 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:28:51 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:30:33 (UTC) | 2 | 2.5 KB |