nf-core/rgi/cardannotation @ 0.0.0-6c4ed3a
Summary
Preprocess the CARD database for RGI to predict antibiotic resistance from protein or nucleotide data
Get started
Add the following snippet to your workflow script to include this module.
include { RGI_CARDANNOTATION } from 'nf-core/rgi/cardannotation'
License
MIT License
Process
Name
|
RGI_CARDANNOTATION |
|---|
Input
1 channel
card
directory
|
Directory containing the CARD database */
|
|---|
Output
4 channels
#1
db
card_database_processed
directory
|
Directory containing the processed CARD database files */
|
|---|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
db_version
DB_VERSION
string
|
The version of the used database in string format (useful for downstream tools such as hAMRronization) |
|---|
#4
tool_version
RGI_VERSION
string
|
The version of the tool in string format (useful for downstream tools such as hAMRronization) |
|---|
| Tool | Description | Homepage |
|---|---|---|
| rgi | This module preprocesses the downloaded Comprehensive Antibiotic Resistance Database (CARD) which can then be used as input for RGI. | https://card.mcmaster.ca |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:40:45 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frgi%2Fcardannotation/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rgi/cardannotation/blobs/sha256:1f518446ec7823543bfae9615b440940e9ce6333a1ed01ff4c07b42eccc29de8 |
| Size | 3.1 KB |
| Checksum | sha256:1f518446ec7823543bfae9615b440940e9ce6333a1ed01ff4c07b42eccc29de8 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:40:45 (UTC) | 1 | 3.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:28:58 (UTC) | 1 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:31:24 (UTC) | 1 | 3.1 KB |