nf-core/rhocall/annotate @ 0.0.0-6c4ed3a
Summary
Markup VCF file using rho-calls.
Get started
Add the following snippet to your workflow script to include this module.
include { RHOCALL_ANNOTATE } from 'nf-core/rhocall/annotate'
License
MIT License
Process
Name
|
RHOCALL_ANNOTATE |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
vcf file *.{vcf,vcf.gz}
|
tbi
file
|
vcf index file *.{tbi}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
roh
file
|
Bcftools roh style TSV file with CHR,POS,AZ,QUAL *.{roh}
|
bed
file
|
BED file with AZ windows. *.{bed}
|
|---|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_rhocall.vcf
file
|
vcf file *.{vcf,vcf.gz}
|
#2
versions_rhocall
tuple
${task.process}
string
|
The name of the process |
|---|---|
rhocall
string
|
The name of the tool |
rhocall --version | sed 's/rhocall, version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rhocall | Call regions of homozygosity and make tentative UPD calls. | https://github.com/dnil/rhocall |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:40:47 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frhocall%2Fannotate/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rhocall/annotate/blobs/sha256:9c51abced5ecb9b33f4a22a878c712b46dc3d6b2dac8db3c48bcd16ac40791b7 |
| Size | 2.5 KB |
| Checksum | sha256:9c51abced5ecb9b33f4a22a878c712b46dc3d6b2dac8db3c48bcd16ac40791b7 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:40:47 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:31:28 (UTC) | 3 | 2.5 KB |