nf-core/ribocode/gtfupdate @ 0.0.0-6c4ed3a
Summary
Update GTF annotation file for RiboCode compatibility
Get started
Add the following snippet to your workflow script to include this module.
include { RIBOCODE_GTFUPDATE } from 'nf-core/ribocode/gtfupdate'
License
MIT License
Process
Name
|
RIBOCODE_GTFUPDATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
gtf
file
|
GTF annotation file to update (uncompressed) *.{gtf}
|
Output
2 channels
#1
gtf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.gtf
file
|
Updated GTF annotation file *_updated.gtf
|
#2
versions_ribocode
tuple
${task.process}
string
|
Name of the process |
|---|---|
ribocode
string
|
Name of the tool |
RiboCode --version 2>&1
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ribocode | A package for detecting the actively translated ORFs using ribosome-profiling data | https://github.com/xryanglab/RiboCode |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:40:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fribocode%2Fgtfupdate/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ribocode/gtfupdate/blobs/sha256:ca865b308fda3a52d237f7b773d4ccb091e435faaf12676be5f9b01c4927be3c |
| Size | 2.2 KB |
| Checksum | sha256:ca865b308fda3a52d237f7b773d4ccb091e435faaf12676be5f9b01c4927be3c |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:40:50 (UTC) | 0 | 2.2 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 19:31:32 (UTC) | 0 | 2.2 KB | - |