Nextflow Registry | nf-core/ribocode/metaplots@0.0.0-0c7146d

nf-core/ribocode/metaplots @ 0.0.0-0c7146d

Set up RiboCode ORF calling with metaplots

ribo-seq ribosome profiling orf calling

Latest version: 0.0.0-6c4ed3a

Total downloads: 0

Source: nf-core/modules

Authors: @JackCurragh

Set up RiboCode ORF calling with metaplots

Add the following snippet to your workflow script to include this module.

include { RIBOCODE_METAPLOTS } from 'nf-core/ribocode/metaplots'

MIT License

Process

`Name`	`RIBOCODE_METAPLOTS`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`bam` file	Sorted BAM/CRAM/SAM file `*.{bam,cram,sam}`

#2 tuple

`meta2` map	Groovy Map containing annotation information e.g. `[ id:'genome' ]`
`annotation` directory	Directory containing annotation files from ribocode/prepare `annotation`

Output 3 channels

#1 pdf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.pdf` file	PDF file containing P-site metaplots for quality control `*_report.pdf`

#2 config tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*config.txt` file	RiboCode configuration file containing P-site offsets `*_config.txt`

#3 versions_ribocode tuple

`${task.process}` string	Name of the process
`ribocode` string	Name of the tool
`RiboCode --version 2>&1` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
ribocode	A package for detecting the actively translated ORFs using ribosome-profiling data	https://github.com/xryanglab/RiboCode

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 19:31:34 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fribocode%2Fmetaplots/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ribocode/metaplots/blobs/sha256:c0e956d19384297f1702bc3bb9959b8ea90f1a7d0902f34f0669e9ba86fcc353
Size	2.9 KB
Checksum	sha256:c0e956d19384297f1702bc3bb9959b8ea90f1a7d0902f34f0669e9ba86fcc353
Downloads	0

Version	Date	Status	Downloads	Size	Diff
0.0.0-6c4ed3a	23 Apr 2026 15:40:51 (UTC)		0	2.9 KB	↔
0.0.0-0c7146d	08 Apr 2026 19:31:34 (UTC)		0	2.9 KB	-