nf-core/ribocode/prepare @ 0.0.0-6c4ed3a
Summary
Prepare the annotation files for RiboCode ORF calling
Get started
Add the following snippet to your workflow script to include this module.
include { RIBOCODE_PREPARE } from 'nf-core/ribocode/prepare'
License
MIT License
Process
Name
|
RIBOCODE_PREPARE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Reference genome FASTA file (uncompressed) *.{fasta,fa,fna}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. |
|---|---|
gtf
file
|
Reference genome GTF annotation file (uncompressed, updated with ribocode/gtfupdate) *.{gtf}
|
Output
2 channels
#1
annotation
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
annotation
directory
|
Directory containing RiboCode annotation files (transcripts_cds.txt, transcripts_sequence.fa, transcripts.pickle) annotation/
|
#2
versions_ribocode
tuple
${task.process}
string
|
Name of the process |
|---|---|
ribocode
string
|
Name of the tool |
RiboCode --version 2>&1
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ribocode | A package for detecting the actively translated ORFs using ribosome-profiling data | https://github.com/xryanglab/RiboCode |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | cd0ad387832473916b1f1c80c2ca673a7883bf94 |
| Release Date | 23 Apr 2026 15:40:52 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fribocode%2Fprepare/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ribocode/prepare/blobs/sha256:fe04efef80a51148848d51351815fbeb4f35c838fa64bb06d77e09d477f1ff24 |
| Size | 2.5 KB |
| Checksum | sha256:fe04efef80a51148848d51351815fbeb4f35c838fa64bb06d77e09d477f1ff24 |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-cd0ad38 | 19 May 2026 15:01:35 (UTC) | 0 | 2.7 KB | ↔ | |
| 0.0.0-6c4ed3a | 23 Apr 2026 15:40:52 (UTC) | 0 | 2.5 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 19:31:36 (UTC) | 0 | 2.5 KB | - |