nf-core/rrnatranscripts @ 0.0.0-3fc6d40
Summary
Ribosomal RNA extraction from a GTF file.
Get started
Add the following snippet to your workflow script to include this module.
include { RRNATRANSCRIPTS } from 'nf-core/rrnatranscripts'
License
MIT License
Process
Name
|
RRNATRANSCRIPTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gtf
file
|
GTF file *.{gtf}
|
Output
2 channels
#1
rrna_gtf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_rrna_intervals.gtf
file
|
Output GTF file containing ribosomal RNA intervals *_rrna_intervals.gtf
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| rrnatranscripts | Extraction of ribosomal RNA | https://github.com/nf-core/rnafusion |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:29:12 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frrnatranscripts/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rrnatranscripts/blobs/sha256:1d1b061d44a4b1488c84b1925bc8ee7945540f2e9fe04306d3cac163c9670d9c |
| Size | 3.0 KB |
| Checksum | sha256:1d1b061d44a4b1488c84b1925bc8ee7945540f2e9fe04306d3cac163c9670d9c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:08 (UTC) | 3 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:29:12 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:31:58 (UTC) | 4 | 3.0 KB |