nf-core/rtgtools/pedfilter @ 0.0.0-0c7146d
Summary
Converts a PED file to VCF headers
Get started
Add the following snippet to your workflow script to include this module.
include { RTGTOOLS_PEDFILTER } from 'nf-core/rtgtools/pedfilter'
License
MIT License
Process
Name
|
RTGTOOLS_PEDFILTER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
The input file, can be either a PED or a VCF file *.{vcf,vcf.gz,ped}
|
Output
2 channels
#1
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{vcf.gz,ped}
file
|
The output file, can be either a filtered PED file or a VCF file containing the PED headers (needs --vcf as argument) *.{vcf.gz,ped}
|
#2
versions_rtgtools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
rtgtools
string
|
The name of the tool |
rtg version | sed 's/Product: RTG Tools //; q'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rtgtools | RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation | https://www.realtimegenomics.com/products/rtg-tools |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:32:25 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frtgtools%2Fpedfilter/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rtgtools/pedfilter/blobs/sha256:3a7091628257728b28b303040a1eca4ad7fdbfd47143fb755a4f5b74c7a1f5b3 |
| Size | 2.9 KB |
| Checksum | sha256:3a7091628257728b28b303040a1eca4ad7fdbfd47143fb755a4f5b74c7a1f5b3 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:28 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:32:25 (UTC) | 4 | 2.9 KB |