nf-core/rtn/tni @ 0.0.0-0c7146d
Summary
Uses the RTN R package for transcriptional regulatory network inference (TNI).
Get started
Add the following snippet to your workflow script to include this module.
include { RTN_TNI } from 'nf-core/rtn/tni'
License
MIT License
Process
Name
|
RTN_TNI |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
expression_matrix
file
|
expression matrix in TSV format *.tsv
|
Output
5 channels
#1
tni
tuple
meta
file
|
RDS R Object with the TNI object tni.rds
|
|---|---|
tni.rds
file
|
RDS R Object with the TNI object tni.rds
|
#2
tni_perm
tuple
meta
file
|
RDS R Object with the TNI object tni.rds
|
|---|---|
tni_permutated.rds
file
|
RDS R Object with the TNI object after permutation tni_permutated.rds
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
tni_filtered
tuple
meta
file
|
RDS R Object with the TNI object tni.rds
|
|---|---|
tni_filtered.rds
file
|
RDS R Object with the TNI object after permutation, bootstrap and filtering tni_filtered.rds
|
#5
tni_bootstrap
tuple
meta
file
|
RDS R Object with the TNI object tni.rds
|
|---|---|
tni_bootstrapped.rds
file
|
RDS R Object with the TNI object after permutation and bootstrap tni_bootstrapped.rds
|
| Tool | Description | Homepage |
|---|---|---|
| rtn | RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons | https://www.bioconductor.org/packages/release/bioc/html/RTN.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:32:33 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Frtn%2Ftni/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rtn/tni/blobs/sha256:5ae196ea20de305f585ac15200f5f97f2f8e2263512475fc8528e5d58643fb21 |
| Size | 4.5 KB |
| Checksum | sha256:5ae196ea20de305f585ac15200f5f97f2f8e2263512475fc8528e5d58643fb21 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:34 (UTC) | 2 | 4.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:32:33 (UTC) | 2 | 4.5 KB |