nf-core/samtools/getrg @ 0.0.0-6c4ed3a
Summary
filter/convert SAM/BAM/CRAM file
Get started
Add the following snippet to your workflow script to include this module.
include { SAMTOOLS_GETRG } from 'nf-core/samtools/getrg'
License
MIT License
Process
Name
|
SAMTOOLS_GETRG |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
Output
2 channels
#1
readgroup
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|
#2
versions_samtools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
samtools
string
|
The tool name |
samtools version | sed '1!d;s/.* //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| samtools | SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA. | http://www.htslib.org/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:42:25 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsamtools%2Fgetrg/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/samtools/getrg/blobs/sha256:3640ee5c92d3e95dbb9662c3949eafd9ac0da4d6997049c302f1cd0296478e65 |
| Size | 2.1 KB |
| Checksum | sha256:3640ee5c92d3e95dbb9662c3949eafd9ac0da4d6997049c302f1cd0296478e65 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:42:25 (UTC) | 4 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:33:51 (UTC) | 3 | 2.1 KB |