Nextflow Modules
Showing module(s) with keyword "view"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bcftools/call | Process | variant calling view bcftools VCF | This command replaces the former bcftools view caller. Some of the original functionality has been temporarily lost in the process of transition under htslib, but will be added back on popular demand. The original calling model can be invoked with the -c option. |
| nf-core/bcftools/view | Process | variant calling view bcftools VCF | View, subset and filter VCF or BCF files by position and filtering expression. Convert between VCF and BCF |
| nf-core/samtools/convert | Process | view index bam cram | convert and then index CRAM -> BAM or BAM -> CRAM file |
| nf-core/samtools/getrg | Process | view bam sam cram readgroup | filter/convert SAM/BAM/CRAM file |
| nf-core/samtools/splitheader | Process | view bam sam cram readgroup program sequence header | Extract header lines from a SAM/BAM/CRAM file into separate files depending on type |
| nf-core/samtools/view | Process | view bam sam cram | filter/convert SAM/BAM/CRAM file |