nf-core/semibin/singleeasybin @ 0.0.0-6c4ed3a
Summary
metagenomic binning with self-supervised learning
Get started
Add the following snippet to your workflow script to include this module.
include { SEMIBIN_SINGLEEASYBIN } from 'nf-core/semibin/singleeasybin'
License
MIT License
Process
Name
|
SEMIBIN_SINGLEEASYBIN |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
Fasta file of the assembled contigs *.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz}
|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram}
|
Output
5 channels
#1
csv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}/*.csv
file
|
generated files *.csv
|
#2
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}/*.tsv
file
|
information of bins *.tsv
|
#3
model
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}/*.h5
file
|
model file *.h5
|
#4
output_fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}/output_bins/*.fa.gz
file
|
precluster fasta files *.fa
|
#5
versions_semibin
tuple
${task.process}
string
|
The name of the process |
|---|---|
SemiBin
string
|
The name of the tool |
SemiBin2 --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| semibin | Metagenomic binning with semi-supervised siamese neural network | https://github.com/BigDataBiology/SemiBin |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:43:49 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsemibin%2Fsingleeasybin/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/semibin/singleeasybin/blobs/sha256:71dd4ac0118f0fa2df2f5bb0f21955afafb49fc103d9d00fa82dbee31dc9ed2c |
| Size | 3.8 KB |
| Checksum | sha256:71dd4ac0118f0fa2df2f5bb0f21955afafb49fc103d9d00fa82dbee31dc9ed2c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:43:49 (UTC) | 3 | 3.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:35:35 (UTC) | 3 | 3.7 KB |