nf-core/seqfu/check @ 0.0.0-3fc6d40
Summary
Evaluates the integrity of DNA FASTQ files
Get started
Add the following snippet to your workflow script to include this module.
include { SEQFU_CHECK } from 'nf-core/seqfu/check'
License
MIT License
Process
Name
|
SEQFU_CHECK |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information. e.g. |
|---|---|
reads
file
|
Either fastq file(s) or directory containing fastq files to be checked *.{fq,fastq}[.gz]
|
Output
2 channels
#1
check
tuple
meta
map
|
Groovy Map containing sample information. e.g. |
|---|---|
${prefix}.tsv
file
|
Tab-separated output file with basic sequence statistics. *.tsv
|
#2
versions_seqfu
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqfu
string
|
The name of the tool |
seqfu version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqfu | A general-purpose program to manipulate and parse information from FASTQ files | https://telatin.github.io/seqfu2/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:30:13 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqfu%2Fcheck/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqfu/check/blobs/sha256:7557ddb5cbdaa2f46d9f10b44adb79928a00e4957bbcba90e1233156263f249b |
| Size | 2.7 KB |
| Checksum | sha256:7557ddb5cbdaa2f46d9f10b44adb79928a00e4957bbcba90e1233156263f249b |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:19 (UTC) | 5 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:13 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:36:22 (UTC) | 3 | 2.6 KB |